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Changelog

2024

2024-05-13 Dirk Eddelbuettel edd@debian.org

    * README.md: Document BioConductor 3.19 support across all three 
    supported releases (now that 22.04 and 20.04 both caught up)

2024-05-12 Dirk Eddelbuettel edd@debian.org

    * README.md: Document 24.04 support

    * inst/scripts/add_cranapt_noble.sh: Add new 24.04 install script

2024-05-11 Dirk Eddelbuettel edd@debian.org

    * R/package.R (.get_source_file): Always download source file if 
    'force' and 'compile' are set 
    * R/controlFiles.R (.addDepends): Refine one regular expression

2024-05-10 Dirk Eddelbuettel edd@debian.org

    * R/init.R: Support Ubuntu 24.04 
    * R/package.R: Idem 
    * inst/scripts/add_cranapt_noble.sh: Idem 
    * docker/noble/*: Build and run-time support for 24.04

2024-04-12 Dirk Eddelbuettel edd@debian.org

    * R/init.R (.loadRuntimedepends): Support run-time dependency 
    declarations via config file 
    * R/controlFiles.R (.addDepends): Show run-time dependencies 
    * R/package.R (buildPackage): Source run-time dependency file

2024-03-25 Dirk Eddelbuettel edd@debian.org

    * README.md: Update usage numbers and charts

2024-02-23 Dirk Eddelbuettel edd@debian.org

    * vignettes/FAQ.md: Expanded FAQ, link FAQ from ToC

2024-02-16 Dirk Eddelbuettel edd@debian.org

    * R/package.R: More consistent color use

2024-02-12 Dirk Eddelbuettel edd@debian.org

    * R/package.R: Package version display small correction, display 
    source repo more prominently

2024-02-11 Dirk Eddelbuettel edd@debian.org

    * R/package.R: Package version display tweak

2024-02-09 Dirk Eddelbuettel edd@debian.org

    * README.md: Update usage counts

2023

2023-12-18 Dirk Eddelbuettel edd@debian.org

    * README.md: Document r2u use in GitHub Actions

2023-12-12 Dirk Eddelbuettel edd@debian.org

    * README.md: Updated totals and count

2023-11-11 Dirk Eddelbuettel edd@debian.org

    * R/package.R: Add new '--compile' flag to force source build

2023-11-10 Dirk Eddelbuettel edd@debian.org

    * repo: Rebuilt a number of packages following Matrix update 
    following discussion and analysis with Mikael Jagan

2023-11-05 Dirk Eddelbuettel edd@debian.org

    * repo: Expanded BioConductor support adding over 100 packages

2023-11-04 Dirk Eddelbuettel edd@debian.org

    * README.md: Mention R 4.3.2 is now the R version used and provided, 
    update package counts from CRAN and BioConductor

    * repo: Rebuild of BioConductor packages for 3.18 release

2023-10-09 Dirk Eddelbuettel edd@debian.org

    * R/package.R (buildPackage): Support new argument 'dryrun'

2023-09-02 Dirk Eddelbuettel edd@debian.org

    * R/package.R: Extended to also update BioConductor packages 
    * R/init.R: Idem

2023-08-20 Dirk Eddelbuettel edd@debian.org

    * README.md: Small edits and minor clarification

2023-08-16 Dirk Eddelbuettel edd@debian.org

    * R/init.R (.setOptions): Set timeout to 180

2023-08-15 Dirk Eddelbuettel edd@debian.org

    * README.md: A few edits throughout

2023-08-13 Dirk Eddelbuettel edd@debian.org

    * docs/*: Added new vignette on 'codespaces'

2023-08-12 Dirk Eddelbuettel edd@debian.org

    * .devcontainers/*: Adding documentation for Devcontainer use

2023-08-09 Dirk Eddelbuettel edd@debian.org

    * R/init.R (.setOptions): Set timeout to 300

2023-06-03 Dirk Eddelbuettel edd@debian.org

    * repo: The metadata for focal (20.04) has been adjusted so packages 
    `sf`, `gdalraster` and `FIESTA` are now available as on 22.04

2023-05-11 Dirk Eddelbuettel edd@debian.org

    * .gitpod.Dockerfile: Update to rocker/r2u:jammy 
    * .gitpod.yml (vscode): Update to REditorSupport.r@2.8.0

2023-05-09 Dirk Eddelbuettel edd@debian.org

    * repo: Several packages using the Graphics API of R itself have been 
    rebuilt for R 4.3.0 and its 'soft' API change

2023-04-29 Dirk Eddelbuettel edd@debian.org

    * repo: Rebuild of BioConductor packages for 3.17 release

2023-04-25 Dirk Eddelbuettel edd@debian.org

    * README.md: Mention R 4.3.0 is now the R version used

2023-04-14 Dirk Eddelbuettel edd@debian.org

    * README.md: Mention rocker/r2u containers

2022

2022-12-25 Dirk Eddelbuettel edd@debian.org

    * docs/mkdmt-src/src/vignettes/FAQ.md: Mention that non-LTS releases 
    can use the LTS repos just fine.

2022-11-19 Dirk Eddelbuettel edd@debian.org

    * inst/NEWS.Rd: Make release 0.0.4 with BioConductor 3.16

2022-09-18 Dirk Eddelbuettel edd@debian.org

    * README.md: Mention that Docker build cannot use bspm as the 
    security setting used at run-time is not available during build time 
    * inst/docs/FAQ.md: Idem

2022-09-16 Dirk Eddelbuettel edd@debian.org

    * README.md: Mention the new mirror r2u.stat.illinois.edu 
    * inst/scripts/add_cranapt_focal.sh: Use r2u.stat.illinois.edu 
    * inst/scripts/add_cranapt_jammy.sh: Idem 
    * docker/focal/run/cranapt.list: Idem 
    * docker/jammy/run/cranapt.list: Idem

2022-09-14 John Blischak jdblischak@gmail.com

    * inst/scripts/add_cranapt_jammy.sh: Add missing 'apt update'

2022-09-11 Dirk Eddelbuettel edd@debian.org

    * README.md: Update to state 'current R' via CRAN apt repo 
    * inst/scripts/add_cranapt_focal.sh: Idem 
    * inst/scripts/add_cranapt_jammy.sh: Idem

2022-09-08 Dirk Eddelbuettel edd@debian.org

    * README.md: Update package number

2022-08-01 Dirk Eddelbuettel edd@debian.org

    * inst/dockerize/Dockerfile: Add 'dockerize' example 
    * inst/dockerize/README.md: Short description

2022-07-12 Dirk Eddelbuettel edd@debian.org

    * R/controlFiles.R (.addDepends): Special-case 'rJava' which does not 
     resolve its shared library given that Java libs are hidden

2022-07-07 Dirk Eddelbuettel edd@debian.org

    * R/init.R (.loadDB, .loadAP): Make cache age a function parameter

2022-06-18 Dirk Eddelbuettel edd@debian.org

    * README.md (Pinning): Refined setup with origin and label 
    * inst/scripts/add_cranapt_{focal,jammy}.sh: Idem 
    * docker/{focal,jammy}/{build,run}: Idem

2022-06-17 Dirk Eddelbuettel edd@debian.org

    * R/package.R (buildPackage): Correct nlme and foreign download

2022-06-08 Dirk Eddelbuettel edd@debian.org

    * inst/docs/FAQ.md: Add entry on Singularity

2022-06-06 Dirk Eddelbuettel edd@debian.org

    * R/controlFiles.R: Accomodate sp with epoch 
    * README.md: Edits

2022-06-02 Dirk Eddelbuettel edd@debian.org

    * R/package.R: Accomodate dash-to-dot in nlme and foreign versions

2022-06-01 Dirk Eddelbuettel edd@debian.org

    * R/controlFiles.R: Accomodate dash-to-dot in foreign version

2022-05-31 Dirk Eddelbuettel edd@debian.org

    * inst/docs/FAQ.md: Draft of two new entries

2022-05-29 Dirk Eddelbuettel edd@debian.org

    * R/package.R: Correct two invisible calls 
    * R/controlFiles.R: Accomodate dash-to-dot in nlme version

2022-05-28 Sergio Oller sergioller@gmail.com

    * README.md: Add missing double-quote in example

2022-05-25 Dirk Eddelbuettel edd@debian.org

    * R/package.R: Support per-distribution blacklist 
    * R/init.R: Idem

    * docker/focal/run/Dockerfile: Note '--security-opt 
    seccomp=unconfined' needed for bspm use

2022-05-22 Dirk Eddelbuettel edd@debian.org

    * README.md: Reword headline

2022-05-21 Dirk Eddelbuettel edd@debian.org

    * inst/scripts/add_cranapt_focal.sh: Use CRAN repo for R 
    * README.md: Ditto

2022-05-20 Dirk Eddelbuettel edd@debian.org

    * R/controlFiles.R: Reflect repo in Description:

2022-05-17 Dirk Eddelbuettel edd@debian.org

    * R/controlFiles.R: Build and cache in per distro dir 
    * R/package.R: Ditto 
    * docker/*/build/debBuild.sh: Add dist argument 
    * README.md: Update package numbers

2022-05-15 Dirk Eddelbuettel edd@debian.org

    * R/controlFiles.R: Correct base package list 
    * R/init.R: Filter commented lines from blacklist 
    * R/package.R: New helper to identify updated packages

2022-05-13 Dirk Eddelbuettel edd@debian.org

    * R/package.R: New top-level function to build updated packages 
    * R/init.R: Support 
    * man/buildPackage.Rd: Docs

    * README.md: Update package numbers

2022-05-11 Dirk Eddelbuettel edd@debian.org

    * README.md: Switch instruction to downloading keys and storing in 
    /etc/apt/trusted.gpg.d/ which is now preferred, additional edits

2022-05-09 Dirk Eddelbuettel edd@debian.org

    * inst/scripts/add_cranapt_jammy.sh: Update key use

    * R/init.R: Correct a cached=file time comparison

2022-05-08 Dirk Eddelbuettel edd@debian.org

    * R/package.R: Add nDeps

    * docker/jammy/run/Dockerfile: Use asc key file

    * .gitpod.Dockerfile: Switch to 22.04

2022-05-07 Dirk Eddelbuettel edd@debian.org

    * README.md: Updated docs 
    * docs/*: Idem

    * docker/jammy/build/*: Use http instead of mount for pinning 
    * docker/jammy/build/debBuild.sh: Call dpkg-buildpackage with -b

    * inst/scripts/add_cranapt_focal.sh: Renamed from add_cranapt.sh 
    * inst/scripts/add_cranapt_jammy.sh: Added

2022-05-06 Dirk Eddelbuettel edd@debian.org

    * R/package.R: Support building for multiple LTS releases 
    * R/init.R: Idem, skip test for R >= 4.0, two-tiered depends 
    * DESCRIPTION: Depend on R >= 4.0

2022-05-04 Dirk Eddelbuettel edd@debian.org

    * R/package.R: Simpler interface

    * inst/examples/add_cranapt.sh: Renamed from setup_r2u.sh

    * README.md: Documentation updates

2022-05-03 Dirk Eddelbuettel edd@debian.org

    * Initial version